FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544008
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19130.3516492404523463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16140.29668681342921427No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15080.27720180585579624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.13529212805694035No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6950.1277554741842032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6870.1262849075748886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6320.11617476213585094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)