FastQCFastQC Report
Wed 31 May 2023
EGAF00007936220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494452
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG82951.6776148139758764No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28680.5800360803475363No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13530.2736362680300616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11710.2368278417318567No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10390.21013162046063116No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8640.1747389028662034No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7650.15471673691278426No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5990.12114421622321278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5370.10860508198975835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)