FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534151
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32030.5996431720618327No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19480.36469088328955673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14660.2744542273626746No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13370.25030375305859204No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11670.2184775466113515No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9280.17373364460611326No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8310.15557398563327599No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6450.12075237152041278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6090.11401270427276182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)