FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480889
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70321.462291713888236No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15920.3310535279451183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12090.2514093688980201No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11900.24745835317505704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8260.17176520985092192No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.1499306492766522No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.14889090829692506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6800.14140477324288975No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6400.1330868454050727No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6080.12643250313481905No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6040.12560071035103734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.12164969462807426No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5710.1187384198848383No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5700.11853047168889287No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.10147871962136792No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4870.10127077142542251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)