FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480230
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11230.23384628198987986No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5740.11952606042937759No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4960.10328384315848656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)