FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502109
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11290.2248515760522118No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10260.20433810188624385No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10090.2009523828491423No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7730.15395063621643906No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6940.138217000691085No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6790.13522960154070132No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6140.12228420522237204No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5750.11451696743137445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)