FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421244
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24910.5913437342727731No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15330.36392209740672865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8390.19917197633675496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7530.17875625528197434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6260.14860745791037971No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5900.14006134212000645No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5440.12914130527675172No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5260.12486824738156509No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5260.12486824738156509No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4470.1061142710638015No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4270.10136642895803857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)