FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466991
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27470.5882340344888873No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10180.21799135315241622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8650.18522840911280944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8260.17687707043604695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.16788332109184118No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5940.12719731215376742No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5570.11927424725530042No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.11670460458552735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)