FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367423
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19690.5358945956023439No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT18380.5002408667938589No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG18270.49724704223742117No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT17370.47275211404838563No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16690.45424483497222545No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG14540.39572917318730727No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14220.3870198653867613No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11830.3219722227514336No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11800.32115572514513246No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11540.31407941255718885No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11430.3110855880007512No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10800.2939391382684263No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10750.292578308924591No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8640.23515131061474107No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA8530.23215748605830336No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8260.2248090076015927No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7590.2065738943941996No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7310.19895325006872186No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7150.19459859616844888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6990.1902439422681759No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6970.18969961053064177No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6150.16738200929174277No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6110.16629334581667451No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5410.1472417350029802No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5330.14506440805284374No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5250.14288708110270723No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5230.1423427493651731No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5120.13934892480873545No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5100.13880459307120133No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5090.13853242720243425No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4860.13227261222079184No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4680.12737362658298473No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4580.12465196789531413No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4330.1178478211761376No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4310.11730348943860346No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4070.11077150858819398No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4010.1091385133755916No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG3960.1077776840317563No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA3800.10342303013148332No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG3680.1001570397062786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)