FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367423
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50811.382874779205439No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29200.7947243367998192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20130.5478698938280946No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18680.5084058428568707No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT18500.5035068572190636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18000.48989856378071056No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16710.4547891667097596No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14460.39355184623717077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13390.36443009827909517No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13370.3638857665415611No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11900.32387738383280307No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11490.31271858321335355No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10800.2939391382684263No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10500.28577416220541446No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9530.2593740729350095No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA9260.25202559447829886No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8360.2275306662892633No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8190.22290384652022327No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7980.217188363276115No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7780.21174504590077375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7070.1924212692183124No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6680.181806800336397No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6200.16874283863557807No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6180.16819850689804394No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5880.1600335308350321No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5870.15976136496626503No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5550.15105205716571907No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5510.14996339369065084No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5480.14914689608434964No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5450.14833039847804846No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5190.14125408589010488No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5110.13907675893996838No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5050.137443763727366No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4810.13091178287695654No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4550.12383547028901294No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4350.11839215291367172No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4240.11539832835723403No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4180.11376533314463165No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4140.11267666966956341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)