FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430961
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57791.340956606282239No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40340.9360475773909936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28010.6499428022489274No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22840.5299783507092289No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18280.42416831221386625No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16920.3926109323117405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16130.37427980722153514No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12880.29886695083777887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11120.25802798861149845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10520.24410561512526655No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10340.23992890307939696No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9690.2248463318026457No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9170.21278027478124473No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8580.19908994085311663No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7980.18516756736688472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7600.1763500641589378No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7330.17008499609013344No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC7040.16335584890512134No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6980.16196361155649813No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6970.1617315719983943No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.1603393346497711No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6780.15732282039442083No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6630.15384222702286285No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.15128979188372033No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6020.13968781397852706No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5990.13899169530421546No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5950.1380635370718No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5900.13690333928128068No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5710.13249458767730724No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG5630.13063827121247631No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5550.1287819547476454No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.12298096579504873No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5000.11601977905193277No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4650.10789839451829748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)