FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443077
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61721.3929858692732866No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16500.37239576868129015No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13670.30852425199231737No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7900.1782985801564965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6060.1367708095884011No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5600.12638886694637727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4970.11217011941490981No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4650.1049478984465454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)