FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529384
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29840.5636740060145377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17840.33699545131700237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14810.27975911625587474No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12620.23839028002357454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.23593459568101793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11580.21874480528312154No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8070.15244132803409247No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7440.14054070391247184No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6980.131851359315733No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6210.11730615205597449No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5580.10540552793435388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)