FastQCFastQC Report
Wed 31 May 2023
EGAF00007936250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471309
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63501.3473114241400015No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28150.5972727021974967No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22770.48312253744358796No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17270.3664262723605957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16240.3445722445359626No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14880.31571644080635No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14680.31147294025787753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12310.26118745875847904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12070.2560952581003121No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9630.20432455140894829No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9530.20220280113471206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9330.19795930058623962No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7620.16167737089680018No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.157858220403175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7070.15000774438850095No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6600.14003551809959072No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6090.12921459170098598No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6040.12815371656386787No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5780.1226371658508537No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5680.12051541557661746No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5660.12009106552177022No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5410.11478668983617966No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5380.1141501647539088No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5210.11054318928770722No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5100.10820926398604737No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4870.10332923835530405No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4850.10290488830045683No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4840.10269271327303318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)