FastQCFastQC Report
Wed 31 May 2023
EGAF00007936254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466976
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66131.4161327348728843No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31880.682690330980607No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17850.3822466250942233No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16690.35740594805728776No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16320.34948262865757557No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15720.33663400260398824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13780.2950901116973892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13040.2792434728979648No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11810.2529037894881107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11440.24498047008839852No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9830.21050332351127254No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9790.20964674844103337No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9620.20600630439251694No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9530.20407901048447885No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9450.20236586034400056No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8640.18502021517165765No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8280.17731103953950525No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7530.16125025697252107No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6180.13234084835194956No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5750.12313266634687864No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5540.11863564722812307No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5240.11221133420132941No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4960.10621530870965532No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4930.10557287740697593No Hit

[OK]Adapter Content

Adapter graph