FastQCFastQC Report
Wed 31 May 2023
EGAF00007936259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459749
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT29290.6370867582093708No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24310.5287667836145375No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20590.44785306765213195No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18590.4043510698228816No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17010.36998449153777385No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15640.3401856230247374No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14520.31582450424035724No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13820.3005988050001196No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12780.2779777661289095No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12610.27428009631342315No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12450.27079993648708317No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11830.25731431716001557No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11340.24665632769184925No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9990.21729247915710528No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9980.21707496916795904No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9610.20902709956954774No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9570.20815705961296274No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9340.20315432986259893No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9240.2009792299711364No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8690.18901618056809258No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8380.18227337090455878No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8380.18227337090455878No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8340.18140333094797378No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7970.17335546134956248No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7810.16987530152322244No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7720.16791771162090618No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7300.15878229207676361No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC6890.14986438252176731No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6650.1446441427822573No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA6580.14312157285823351No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6440.140076433010186No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5770.12550326373738716No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5230.11375772432348956No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC5210.11332270434519705No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5160.11223515439946578No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC5070.11027756449714954No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT5050.10984254451885704No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4950.10766744462739453No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4820.10483981476849324No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4630.10070712497471446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)