FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448958
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65161.4513607063466962No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18020.4013738478877757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16610.36996779208745584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11520.25659415802814517No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11150.24835285260536621No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10400.23164750377540883No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9270.20647811153827306No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8530.18999550069271515No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8520.1897727627083157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8290.18464978906712878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6520.1452251658284294No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6490.1445569518752311No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6330.14099314412484018No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6050.1347564805616561No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5710.12718338909207544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5480.1220604154508885No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5420.12072398754449191No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5050.11248268212171295No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4710.10490959065213228No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4560.1015685208861408No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4540.10112304491734193No Hit

[OK]Adapter Content

Adapter graph