FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497759
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34320.689490295504451No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29310.5888391771921754No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11030.2215931806356088No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10740.2157670679987705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9860.19808782965250252No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8380.16835456516105185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7400.1486663224572534No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7280.14625551722821686No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5480.11009343879266874No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5160.1036646248485713No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5140.1032628239770652No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.10105291918378172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)