FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493823
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29070.5886724595654719No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19020.38515824495821377No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18610.376855675009062No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17210.3485054361582996No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC15800.31995269560146045No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14910.3019300437606187No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13550.2743898117341638No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12840.26001219060270586No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7750.1569388222095771No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7600.153901296618424No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6300.12757607482843042No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5840.11826099634889423No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5120.10368087351135935No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5030.10185835815666748No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5010.10145335474451371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)