FastQCFastQC Report
Sun 21 May 2023
EGAF00007936278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15930.3461147371439994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9180.1994559502185759No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8860.1925032373569262No Hit
ATGCGCGACTACCAGCGTCCGATGGTACAGT7660.1664305641257398No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5560.12080338597116362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5110.11102613350946872No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4900.10646341569401112No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4750.1032043315401128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)