FastQCFastQC Report
Wed 31 May 2023
EGAF00007936296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491424
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38220.7777397929283063No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38110.7755014000130234No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA25730.5235804519111806No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24230.4930569121573224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21820.4440157582861236No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT21270.43282379370970897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16950.3449159992185974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13850.28183401706062383No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12750.2594500879077945No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12050.245205769355994No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10440.21244383668685288No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10270.20898450218141562No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9700.19738555707494954No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8900.18110633587289185No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8530.17357719606694016No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6260.12738490590610146No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6100.1241290616656899No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5310.10805333072865794No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5080.10337305463306636No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5040.10255909357296347No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4970.10113466171778342No Hit

[OK]Adapter Content

Adapter graph