FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457185
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT78811.7238098362807182No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22360.48907991294552533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15370.33618775769108783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13060.2856611656112952No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12240.267725319072148No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10620.23229108566554021No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8650.18920130800441834No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8560.18723273948182903No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8500.18592036046676946No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8340.18242068309327733No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8290.18132703391406105No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7820.1710467316294279No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6190.13539376838697684No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5510.12052013954963527No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5080.11111475660837518No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5040.11023983726500214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5010.10958364775747237No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4980.10892745824994257No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4680.10236556317464483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)