FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465907
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23070.49516319780557067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16760.3597284436593569No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG9490.20368871899327545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8900.19102524752794012No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7470.16033242685772053No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5760.12362982311920619No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5460.11719076983174753No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5010.10753218990055956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)