FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442017
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45191.0223588685503044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.4986233561152626No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19240.4352773762095123No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17740.4013420298314318No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15110.3418420558485307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13210.2988572837696288No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12980.29365386399165644No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12930.2925226857790537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.1943364169251409No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8100.1832508704416346No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7790.17623756552349795No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7300.1651520190399917No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7290.16492578339747113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6180.13981362707769157No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6130.1386824488650889No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5960.13483644294223976No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5790.13099043701939064No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5490.12420336774377456No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5360.12126230439100757No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4620.10452086684448789No Hit

[OK]Adapter Content

Adapter graph