FastQCFastQC Report
Wed 31 May 2023
EGAF00007936308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449549
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51481.1451476924651152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23920.5320888268019727No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22210.4940507041501594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20330.45223101374933544No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19130.4255375943445542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13810.30719676831669074No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12760.28384002633750716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12600.280280903750203No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6950.15459938738602466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6870.15281982609237257No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6710.1492607035050684No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6450.14347712930069917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.1421424583304601No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5440.1210101679683416No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5290.11767349054274394No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.11322458730861375No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5050.11233480666178769No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4960.1103328002064291No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4740.10543900664888588No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4680.10410433567864681No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4590.10210232922328823No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4530.10076765825304916No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4520.10054521309134266No Hit

[OK]Adapter Content

Adapter graph