FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419804
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36680.8737410791702794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28460.6779354174805385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21360.5088088727120276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18500.44068184200245825No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16700.3978046898076245No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16650.3966136578022124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16270.3875618145610809No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16160.38494154414917436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11240.2677439948166287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10090.24035025869215157No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9830.23415689226400893No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9080.21629141218282816No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9000.2143857609741689No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8990.21414755457308648No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8430.20080799611247152No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8160.19437642328324647No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8000.19056512086592792No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7610.18127507122371392No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7170.17079398957608788No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6970.1660298615544397No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6740.16055111432954425No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6440.15340492229707195No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.15292850949490713No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5950.1417328086440339No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.1398271574353746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.13911253823212738No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5790.13792150622671534No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5400.12863145658450134No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5380.12815504378233653No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5310.12648759897475964No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5050.12029423254661699No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4970.11838858133795772No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4910.11695934293146325No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4860.1157683109260512No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4520.10766929328924926No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4410.10504902287734276No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4400.10481081647626037No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4370.10409619727301313No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4250.1012377204600242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)