FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415869
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21590.5191538681652155No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14450.34746518735467175No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12120.29143792877083885No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10150.2440672423287141No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9890.2378152735597027No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8990.21617384320543248No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8780.21112417612276943No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8410.20222714364379166No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8350.20078438162017365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8280.19910115925928598No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8200.1971774765611286No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7540.1813070943013305No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7030.16904361710057733No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6970.16760085507695932No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6930.16663901372788065No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.16519625170426264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.16423441035518396No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6060.14571896438541942No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6040.14523804371088012No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5900.14187159898910476No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5200.1250393753802279No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4990.11998970829756486No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4950.11902786694848617No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4890.11758510492486816No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4800.11542096188944115No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4750.1142186602030928No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4750.1142186602030928No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4700.11301635851674445No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4560.10964991379496909No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4560.10964991379496909No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4340.10435978637503636No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4190.10075288131599133No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4170.100271960641452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)