FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416113
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20730.4981819842206324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14270.34293569294879034No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11970.28766224559194253No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9380.2254195374814053No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9220.22157442810005934No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8380.20138760384799323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6630.15933171998952209No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6320.15188182056316432No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5870.1410674504281289No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5600.13457882834710763No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5290.1271289289207499No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5250.1261676515754134No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4830.11607423944938033No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC4640.11150817205903205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4530.10886465935935671No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4450.10694210466868374No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4280.1028566759510037No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4210.10117444059666485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)