FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390442
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18530.47459033608064705No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11760.30119710481966594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9350.2394721879306017No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9080.23255694827912982No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8870.22717842855020717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8560.21923870895036907No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8520.21821422900200285No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.165453511661143No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.15546483216457246No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5850.1498301924485583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5490.1406098729132624No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4730.12114475389430442No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4640.11883967401048043No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4280.10961935447518453No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4170.10680203461717747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4150.10628979464299435No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4020.10296023481080416No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4010.10270411482371261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)