FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427248
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34030.7964929034190915No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20720.48496423622813917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11850.2773564768003595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10730.2511421937610006No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8030.1879470471482605No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7590.1776485788113695No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6870.1607965397146388No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6560.15354080065910197No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.14605100550499944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5850.13692281766093697No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5830.13645470546380556No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4470.1046230760588698No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4450.10415496386173839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)