FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470786
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT27290.5796688941472347No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22580.4796234382500754No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19300.409952717370525No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16970.3604610162579176No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT12980.2757091332367572No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11990.25468047053225884No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11540.24512198748475952No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10470.22239403890515014No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9800.20816251970109562No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9130.19393100049704112No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8570.18203599937126422No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA7830.16631760502648762No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7040.14953715700976664No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6820.14486412085321143No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6560.13934144175910074No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5730.12171135080482427No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5560.11810036832021344No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5300.11257768922610271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)