FastQCFastQC Report
Wed 31 May 2023
EGAF00007936328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470786
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46860.9953567013462592No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27680.5879529127884007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24060.5110602269396286No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20980.4456377207478557No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17800.3780911072121941No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13680.2905778846439784No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12910.2742222580960351No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12420.26381413211098037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11880.2523439524539812No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9400.1996660903255407No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8200.17417680219887594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.15484742536948848No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6420.1363676914776565No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6410.13615528074326766No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.1206492971328799No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5630.11958724346093554No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5450.11576385024193582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)