FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427217
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12510.2928254259544915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10020.2345412284623505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9100.21300650489095704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7820.18304515035684443No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6120.14325272636622607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4700.11001434867994485No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4610.10790769093926506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)