FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498417
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41160.8258145287981751No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30320.6083259599893263No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23980.4811232361657006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15550.3119877532267158No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11930.23935780681638066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10400.20866061952140474No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9890.1984282237564128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8450.16953675336114138No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7960.15970562801830596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7940.15930435759614942No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.1518808547862533No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7000.14044464775479168No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6460.12961034635656488No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5940.11917731538049466No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA5290.10613602666040683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)