FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545030
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA62771.151679724051887No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA34630.6353778691081226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31310.5744637909839825No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15050.2761315890868392No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14760.27081078105792344No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13540.24842669210869125No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13110.2405372181347816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12490.22916169752123738No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG12390.22732693613195604No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10420.19118213676311394No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9900.18164137753885107No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG9710.17815533089921656No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC9000.16512852503531913No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8470.15540428967212816No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8340.1530190998660624No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT8230.15100086233785295No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7940.14568005430893713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7510.13779058033502745No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7510.13779058033502745No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7390.13558886666788986No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7250.13302020072289597No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7140.13100196319468652No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6950.127515916555052No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6640.12182815624827992No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6450.1183421096086454No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA6190.11357172999651396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6130.11247087316294516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.1088013503843825No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5920.10861787424545437No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC5750.10549877988367613No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5570.10219620938296975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)