FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503118
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19640.39036567962187796No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18470.3671106976892101No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13590.2701155593717577No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13490.2681279540783673No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11450.2275808060932028No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10500.2086985558059938No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8640.17172909734893207No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8150.161989831411319No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC8140.16179107088197997No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8100.16099602876462382No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7790.1548344523551135No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7730.15364188917907926No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7600.15105800229767172No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7200.14310758112411004No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6300.12521913348359628No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6220.12362904924888396No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6200.12323152819020587No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5990.11905755707408601No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5970.11866003601540792No Hit
GGAACACACGTGCAGGCCATAAGAGCACAGGTCTTTGTTGTCAT5580.1109083753711853No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5430.10792696743109967No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5230.10395175684431883No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5140.10216291208026745No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5100.10136786996291129No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5080.1009703489042332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)