FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503118
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44800.890447171438907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41050.8159119729367663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18150.36075036075036077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.2685254751370454No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12330.24507173267503843No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11040.21943162439030206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9020.17928199746381565No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8570.17033777364355876No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.16596504199809986No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8220.1633811551166923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8200.16298363405801422No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC8070.16039974717660668No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7680.15264808653238404No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7610.15125676282701075No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6150.12223772554351066No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5990.11905755707408601No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.11687119125135653No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5880.11687119125135653No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5860.11647367019267844No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5810.11547986754598324No Hit
GAAGACGGTGATATCATCCTGTACAAAAGCG5670.11269722013523666No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5440.10812572796043872No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5430.10792696743109967No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5100.10136786996291129No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5050.10037406731621606No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5040.10017530678687703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)