FastQCFastQC Report
Sun 21 May 2023
EGAF00007936351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559627
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14820.26481924567613785No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14070.2514174619880742No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12790.22854508449377892No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11350.20281365981269667No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG10950.1956660418457294No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8800.15724759527328025No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7920.14152283574595223No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.12061605319257292No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6460.11543403016652162No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5850.10453391276689653No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5810.1038191509701998No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5630.10060272288506451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)