FastQCFastQC Report
Wed 31 May 2023
EGAF00007936352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559627
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30970.553404321092442No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15670.28000793385594336No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15240.2723242445414535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14210.25391912827651275No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11660.2083530637370963No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11030.19709556543912288No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC10860.19405782780316175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.13133748014302382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6750.12061605319257292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6420.1147192683698249No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6150.10989462624212198No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5820.10399784141937399No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.10060272288506451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)