FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536903
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45770.8524817331994792No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18720.3486663326522668No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16170.30117172003136505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10050.18718464974120094No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9530.1774994738341935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8780.1635304701221636No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8760.16315796335650948No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG8290.15440405436363738No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7800.14527763860511117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7760.1445326250738029No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7440.1385725168233368No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7030.1309361281274271No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6740.12553478002544222No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.10597817482860034No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5680.10579192144577326No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5640.10504690791446498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)