FastQCFastQC Report
Sun 21 May 2023
EGAF00007936358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428223
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45491.0622969807787064No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6520.1522571183705686No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6480.1513230256198289No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6410.14968836330603447No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5970.13941334304789793No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5320.12423433584837805No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5080.11862977934393995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)