FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431869
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46651.0801886683230333No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18200.42142408924928626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10470.24243462716703446No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9880.2287730770210411No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9400.21765859554633465No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8560.19820825296559835No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8540.19774514957081893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7580.17551618662140603No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7320.16949584248927338No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.1569920508302286No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6710.15537118894850058No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5990.1386994667364409No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5490.12712188186695503No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5280.12225929622177095No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4560.10558757400971126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)