FastQCFastQC Report
Wed 31 May 2023
EGAF00007936366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455660
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.4836939823552649No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18060.3963481543255936No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11220.24623622876706316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10820.23745775358820173No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10020.21990080323047886No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9050.1986130009217399No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8650.18983452574287846No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8160.1790808936487732No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7770.17052188034938331No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7410.16262125268840802No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7090.15559847254531886No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6500.14265022165649827No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5950.13057981828556378No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5620.12333757626300312No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4930.10819470657946716No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4890.10731685906158099No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4820.10578062590528026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)