FastQCFastQC Report
Sun 21 May 2023
EGAF00007936367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446078
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14820.3322288927048633No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10130.227090329493945No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9540.21386394307721968No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9120.20444854935683893No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7700.17261555154031358No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6960.15602652450916657No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6510.14593860266590147No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5560.12464187877456409No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5280.11836494962764359No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5280.11836494962764359No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5190.11634736525899059No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5000.1120880204807231No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4850.1087253798663014No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC4850.1087253798663014No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4740.1062594434157255No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4730.10603526737476404No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4500.1008792184326508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)