FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442953
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20500.46280305133953265No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19380.4375182017053728No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18300.4131363824152901No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14170.31989849938932574No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12460.2812939521800281No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11720.2645878908146011No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11670.2634591028845047No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10880.2456242535889812No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10680.24110910186859552No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10270.2318530408418049No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9280.20950303982589574No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8480.191442432944353No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8390.18941061467017947No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8160.1842181901917359No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.18241212950358165No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7850.17721970502513812No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7180.16209394676184607No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7130.16096515883174964No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7060.15938485572961464No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6160.13906667298787906No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.13635758195564765No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5610.12665000575681845No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5520.12461818748264487No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5170.11671667197196993No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5170.11671667197196993No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5100.11513636886983496No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5010.11310455059566138No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA4930.11129848990750711No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4620.10430000474090931No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4600.10384848956887073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)