FastQCFastQC Report
Sun 21 May 2023
EGAF00007936370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442953
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43870.9903985298665998No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24240.547236388510745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24180.5458818429946292No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21540.48628184028553817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20550.46393183926962905No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12770.28829243734662596No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11810.26661970908877464No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11680.263684860470524No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10870.24539849600296193No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10100.22801516187947704No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10040.22666061636336135No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9320.21040607016997287No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9300.20995455499793433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9190.2074712215517222No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8960.20227879707327864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8360.1887333419121216No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7630.17225303813271386No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7560.17067273503057886No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7530.16999546227252102No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7300.16480303779407748No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6900.1557727343533061No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6420.14493637022438047No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5920.13364849092341624No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5700.12868182403099201No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5480.12371515713856775No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5440.1228121267944906No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5440.1228121267944906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5410.12213485403643276No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5310.11987727817623993No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG4980.11242727783760355No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4840.10926667163333358No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4640.10475151991294787No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4510.1018166712946972No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4430.1000106106065429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)