FastQCFastQC Report
Sun 21 May 2023
EGAF00007936374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431208
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22650.52526854789336No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12740.29544906402478616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11990.2780560657501716No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9830.22796423071928165No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9710.22518135099534334No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9500.22031131147845123No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8950.20755644607706722No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8910.2066288195024211No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7200.16697278343629987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.1662770635053153No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6470.15004359844900836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5910.13705682640396283No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5900.13682491976030128No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5740.13311441346171685No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5700.13218678688707075No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5340.12383814771525575No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4970.11525760189977922No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4830.11201090888851784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4800.11131518895753326No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4490.1041260830040259No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4350.10087938999276452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)