FastQCFastQC Report
Sun 21 May 2023
EGAF00007936378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426828
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47221.1063004301498496No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41000.9605742828492976No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20860.4887214522008866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20440.47888142296194247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17820.4174983834237679No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC16650.3900868734009953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15080.3533039069601807No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13820.3237838192433486No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13660.3200352366761318No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10230.23967499789142233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10150.2378007066078139No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9320.21835493454037694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8890.20828061889098184No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8390.19656629836842945No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8090.18953770605489798No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC8030.1881319875921917No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7770.18204054092046446No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7670.17969767681595397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7370.17266908450242252No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7170.16798335629340155No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7140.16728049706204842No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6950.16282905526347852No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6890.1614233368007722No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6760.15837761346490858No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6630.15533189012904494No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6470.1515833075618282No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5930.13893184139747158No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5910.1384632685765695No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5180.12136036061364296No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5030.11784606445687723No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4710.11034889932244371No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4700.11011461291199265No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4590.10753746239703112No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4560.10683460316567799No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4530.10613174393432484No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4510.10566317111342274No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4420.1035545934193633No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4350.10191458854620597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)