FastQCFastQC Report
Sun 21 May 2023
EGAF00007936386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423330
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46931.1085914062315452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25370.5992960574492713No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19490.4603973259631966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17580.4152788604634682No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14560.3439397160607564No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13730.3243332624666336No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12740.3009472515531618No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11750.27756124063969007No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10170.240238112111119No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9790.2312616634776652No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9610.22700966149339757No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9570.22606477216356036No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9200.21732454586256586No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8300.1960645359412279No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7640.18047386199891338No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7570.17882030567169818No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7410.17504074835234923No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7100.1677178560461106No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6870.16228474239954646No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.16181229773462785No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6850.16181229773462785No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6820.1611036307372499No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6580.15543429475822643No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6380.15070984810904023No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6210.14669406845723196No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5990.14149717714312712No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5540.1308671721824581No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5400.12756005952802776No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5390.12732383719556847No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.12307183521130087No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5070.11976472255687053No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5050.1192922778919519No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4300.1015756029575036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)