FastQCFastQC Report
Wed 31 May 2023
EGAF00007936390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474589
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55921.1782826824894803No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19380.4083533330945302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14070.2964670483302394No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9510.20038391113152643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8950.188584227615895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.12389667691412991No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5650.11905037832735273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)